Stem-loop ggo-mir-409

Accession

MI0020717

Description

Gorilla gorilla ggo-mir-409 precursor miRNA

Gene family

MIPF0000018; mir-154

Sequence

ucuccaugguacucggggagAGGUUACCCGAGCAACUUUGCAucuggacgacgaauguugcucggugaaccccuuuucgguaucaaauuccaccagggaggccaucuuggag
.(((((((((((.(((((((.((((..((((((((((((((........).)))).)))))))))..)))).)))))))))))))..((((....))))........)))))

Structure

u     ----------------------      u       A    AC         -    - Auc 
 cucca                      ugguac cggggag GGUU  CCGAGCAAC UUUG C   u
 |||||                      |||||| ||||||| ||||  ||||||||| |||| |    
 gaggu                      acuaug gcuuuuc ccaa  ggcucguug aagc g   g
-     ucuaccggagggaccaccuuaa      -       c    gu         u    a cag 

Annotation confidence Not enough data

Genome context

chr14: 85088352-85088463 [+]

Clustered miRNAs

9 other miRNAs are < 10 kb from ggo-mir-409

Mature ggo-miR-409

• Accession: MIMAT0024170
• Description: Gorilla gorilla ggo-miR-409 mature miRNA
• Sequence: 21 - AGGUUACCCGAGCAACUUUGCA - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116