Stem-loop ggo-mir-20b

Accession

MI0020774

Description

Gorilla gorilla ggo-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Sequence

agauuggguccuaguaguacCAAAGUGCUCAUAGUGCAGGUAGuuuuggcaugacucuacuguaauaugggcacuuccaguacucuuggauaacaaaucucuuguugauggag
(((((..((((.((.(((((..(((((((((((.(((((..((((.......))))...))))).)))))))))))...))))))).))))....))))).............

Structure

-------------     --gg    u  u     -CA           G     -GU    uu 
             agauu    gucc ag aguac   AAGUGCUCAUA UGCAG   AGuu  g
             |||||    |||| || |||||   ||||||||||| |||||   ||||  g
             ucuaa    uagg uc ucaug   uucacggguau auguc   ucag  c
gagguaguuguuc     acaa    u  -     acc           a     auc    ua 

Annotation confidence Not enough data

Genome context

chrX: 134207730-134207842 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ggo-mir-20b

Mature ggo-miR-20b

• Accession: MIMAT0024227
• Description: Gorilla gorilla ggo-miR-20b mature miRNA
• Sequence: 21 - CAAAGUGCUCAUAGUGCAGGUAG - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116