miRBase entry: ggo-mir-1197

Stem-loop ggo-mir-1197

Accession

MI0020792

Description

Gorilla gorilla ggo-mir-1197 precursor miRNA

Gene family

MIPF0000126; mir-379

Sequence

caggggucagcgucacuuccugguauuugaagaugcgguugaccaugguguguacgcuuuauuugugacgUAGGACACAUGGUCUACUUCuucucaauaucacaucucgc
..(((((.......))))).(((((((.(((((...(((.(((((((.(((.(((((.........).))))..)))))))))).))))))))..)))))))........

Structure

caggggucagcgucacuucc       -u     ugc   u       g   -g    - uuu 
                    ugguauu  gaaga   ggu gaccaug ugu  uacg c   a
                    |||||||  |||||   ||| ||||||| |||  |||| |   u
                    acuauaa  cuuCU   UCA CUGGUAC ACA  AUgc g   u
------------cgcucuac       cu     ---   U       -   GG    a ugu

Annotation confidence Not enough data

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Genome context

chr14: 85048882-85048991 [+]

Clustered miRNAs

11 other miRNAs are < 10 kb from ggo-mir-1197

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ggo-miR-1197

Accession	MIMAT0024245
Description	Gorilla gorilla ggo-miR-1197 mature miRNA
Sequence	71 - UAGGACACAUGGUCUACUUC - 90
Evidence	experimental Illumina [1]

References

PubMed ID: 22453055
Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
"Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
"BMC Genomics (2012) 13:116