Stem-loop ggo-mir-200a

Accession

MI0020848

Description

Gorilla gorilla ggo-mir-200a precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

gggaccccacgucccucccgggccccugugagcaucuuaccggacagugcuggauuucccagcuugacucUAACACUGUCUGGUAACGAUGUucaaaggugacccgccgcu
(((((.....)))))...(((((.(((.(((((((((((((((((((((((((.....)))))...........)))))))))))).)))))))).))).).)))).....

Structure

gggaccccacgucccucc    - c   g        -            -----------     a 
                  cggg c ccu ugagcauc uuaccggacagu           gcugg u
                  |||| | ||| |||||||| ||||||||||||           ||||| u
                  gccc g gga acuUGUAG AAUGGUCUGUCA           cgacc u
-------------ucgcc    a u   a        C            CAAUcucaguu     c 

Annotation confidence Not enough data

Genome context

chr1: 809523-809633 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ggo-mir-200a

Mature ggo-miR-200a

• Accession: MIMAT0024300
• Description: Gorilla gorilla ggo-miR-200a mature miRNA
• Sequence: 71 - UAACACUGUCUGGUAACGAUGU - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116