Stem-loop sequence mml-mir-514b

Accession

MI0020896 (change log)

Description

Macaca mulatta miR-514b stem-loop

Gene family

MIPF0000130; mir-506

Literature search

1 open access papers mention mml-mir-514b
(1 sentences)

Stem-loop

   auccuuaaauguucuauucc       g      u    -     gagg         g a 
5'                     ucaugug uacucu cuca agagg    caaucaugu u a
                       ||||||| |||||| |||| |||||    ||||||||| |  
3'                     gguacac augaga gagu ucucc    guuaguaua a u
   -----------uaccuuuau       a      u    g     -aca         g u 

Deep sequencing

92749 reads, 4.36e+03 reads per million, 9 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Mmul_8.0.1; GCA_000772875.3): chrX: 140957046-140957156 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mml-mir-514b

• mml-mir-509-2: chrX: 140966410-140966503 [-]
• mml-mir-514b: chrX: 140957046-140957156 [-]
• mml-mir-508: chrX: 140953010-140953094 [-]
• mml-mir-507: chrX: 140947139-140947232 [-]

Database links

• miRBase Tracker:MI0020896

Mature sequence mml-miR-514b-5p

• Accession: MIMAT0027119
• Sequence: 34 - uucucaagagggaggcaauca - 54
• Deep sequencing: 979 reads, 7 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:mml-miR-514b-5p

Mature sequence mml-miR-514b-3p

• Accession: MIMAT0024348
• Sequence: 71 - auugacaccucugugaguaga - 91
• Deep sequencing: 91765 reads, 9 experiments
• Evidence: experimental; Illumina [1-2]
• Predicted targets:
  • TargetScanVert:mml-miR-514b-3p

References

1. PMID:22453055 "Annotation of primate miRNAs by high throughput sequencing of small RNA libraries" Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J BMC Genomics. 13:116(2012).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).