miRBase entry: mml-mir-514b

Stem-loop mml-mir-514b


Accession
MI0020896
Description
Macaca mulatta mml-mir-514b precursor miRNA
Gene family
MIPF0000130; mir-506

Literature search
1 open access papers mention mml-mir-514b
(1 sentences)

Sequence

7236 reads, 406 reads per million, 9 experiments
auccuuaaauguucuauuccucaugugguacucUUCUCAAGAGGGAGGCAAUCAuguguaauuagauaugAUUGACACCUCUGUGAGUAGAguaacacaugguauuuccau
....................(((((((.((((((.(((((((((....(((((((((........)))))))))...))))).)))).)))))).))))))).........

Structure
auccuuaaauguucuauucc       g      U    -     GAGG         gua 
                    ucaugug uacucU CUCA AGAGG    CAAUCAugu   a
                    ||||||| |||||| |||| |||||    |||||||||    
                    gguacac augAGA GAGU UCUCC    GUUAguaua   u
-----------uaccuuuau       a      U    G     -ACA         gau 


Annotation confidence High
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Genome context
chrX: 140957046-140957156 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from mml-mir-514b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mml-miR-514b-3p

Accession MIMAT0024348
Description Macaca mulatta mml-miR-514b-3p mature miRNA
Sequence 71 - AUUGACACCUCUGUGAGUAGA - 91
Evidence experimental
Illumina [1-2]

Mature mml-miR-514b-5p

Accession MIMAT0027119
Description Macaca mulatta mml-miR-514b-5p mature miRNA
Sequence 34 - UUCUCAAGAGGGAGGCAAUCA - 54
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45