Stem-loop mml-mir-518d-1

Accession

MI0020903

Description

Macaca mulatta mml-mir-518d-1 precursor miRNA

Gene family

MIPF0000020; mir-515

Sequence

194 reads, 40 reads per million, 4 experiments

gaagaucucaugaugugacuCUCUAGAGGAAAGCGCUUACUGuuggcuaaaaaaauagGAAGCGCUUCUCUUUAGAGUGuuacgcuuugagaaaagcaacgcggaucuug
.(((((((......(((((.(((((((((.(((((((..(((((.........)))))..))))))).))))))))).)))))(((((....))))).....))))))).

Structure

g       -------------caugau     u         A       UA     ggc 
 aagaucu                   gugac CUCUAGAGG AAGCGCU  CUGuu   u
 |||||||                   ||||| ||||||||| |||||||  |||||   a
 uucuagg                   cauuG GAGAUUUCU UUCGCGA  gauaa   a
g       cgcaacgaaaagaguuucg     U         C       AG     aaa 

Annotation confidence High

Genome context

chr19: 49073236-49073345 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from mml-mir-518d-1

Mature mml-miR-518d-5p

• Accession: MIMAT0024355
• Description: Macaca mulatta mml-miR-518d-5p mature miRNA
• Sequence: 21 - CUCUAGAGGAAAGCGCUUACUG - 42
• Evidence: experimental ; Illumina [1]

Mature mml-miR-518d-3p

• Accession: MIMAT0027121
• Description: Macaca mulatta mml-miR-518d-3p mature miRNA
• Sequence: 59 - GAAGCGCUUCUCUUUAGAGUG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45