miRBase entry: ppy-mir-3943

Stem-loop ppy-mir-3943


Accession
MI0020911
Description
Pongo pygmaeus ppy-mir-3943 precursor miRNA
Gene family
MIPF0001400; mir-3943


Sequence

acagacggcagcugcggccUAGCCCCCAGGCUUCACUUGGCGuggacaacuugcuaaguaaaguggggggugggccacggcuggcuccuaccuggacaggccuccagcuaac
...((.(.((((((.((((((.(((((..((((.((((((((.(.....).)))))))).))))))))).)))))).)))))).)))....(((((......))))).....

Structure
----------------------aca  c g      c      G     AG    C        u g 
                         ga g cagcug ggccUA CCCCC  GCUU ACUUGGCG g a
                         || | |||||| |||||| |||||  |||| |||||||| | c
                         cu c gucggc ccgggu ggggg  ugaa ugaaucgu c a
caaucgaccuccggacagguccauc  - g      a      g     --    a        u a 


Annotation confidence Not enough data
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Genome context
chr7: 40942157-40942268 [-]

Database links

Mature ppy-miR-3943

Accession MIMAT0024363
Description Pongo pygmaeus ppy-miR-3943 mature miRNA
Sequence 20 - UAGCCCCCAGGCUUCACUUGGCG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116