miRBase entry: ppy-mir-454

Stem-loop ppy-mir-454


Accession
MI0020915
Description
Pongo pygmaeus ppy-mir-454 precursor miRNA
Gene family
MIPF0000174; mir-454


Sequence

aaaaaauucuguuugucaccagauccuagaacccuaucaauauugucucugcuguguaaauaguucugagUAGUGCAAUAUUGCUUAUAGGGuuuugguguuugggaagaa
...............((.((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).))))))))....

Structure
aaaaaauucuguuug  a      c            ---         ----   --u     g 
               uc ccagau cuagaacccuau   caauauugu    cuc   gcugu u
               || |||||| ||||||||||||   |||||||||    |||   |||||  
               ag gguuug gguuuuGGGAUA   GUUAUAACG    gag   ugaua a
-----------aaga  -      u            UUC         UGAU   ucu     a 


Annotation confidence Not enough data
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Genome context
NW_002962513.1: 2376800-2376910 [+]

Database links

Mature ppy-miR-454

Accession MIMAT0024367
Description Pongo pygmaeus ppy-miR-454 mature miRNA
Sequence 71 - UAGUGCAAUAUUGCUUAUAGGG - 92
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116