miRBase entry: ppy-mir-3660

Stem-loop ppy-mir-3660


Accession
MI0020919
Description
Pongo pygmaeus ppy-mir-3660 precursor miRNA
Gene family
MIPF0001397; mir-3660


Sequence

agugaaaaggagaaagaagaacuggacaaaauuaaaaugcucuucugucauuguaauaguucauaugggCACUGACAGGAGAGCAUUUUGAcuuugucaagugugucugcu
..............(((...(((.((((((.(((((((((((((((((((.(((.(((.....)))..))).))))))))))))))))))).)))))).)))...)))...

Structure
agugaaaaggagaa   aga   g      a                   u   -a   g 
              aga   acu gacaaa uuaaaaugcucuucuguca ugu  aua u
              |||   ||| |||||| ||||||||||||||||||| |||  ||| u
              ucu   uga cuguuu AGUUUUACGAGAGGACAGU ACg  uau c
-----------ucg   gug   a      c                   C   gg   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr5: 90602296-90602406 [-]

Database links

Mature ppy-miR-3660

Accession MIMAT0024371
Description Pongo pygmaeus ppy-miR-3660 mature miRNA
Sequence 70 - CACUGACAGGAGAGCAUUUUGA - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116