miRBase entry: ppy-mir-548a

Stem-loop ppy-mir-548a


Accession
MI0020921
Description
Pongo pygmaeus ppy-mir-548a precursor miRNA
Gene family
MIPF0000317; mir-548

Literature search
1 open access papers mention ppy-mir-548a
(2 sentences)

Sequence

auuuaugcacugcagggagguauuaaguuggugcAAAAGUAAUUGUGGUUUUUGccacuaaaaguaaugacaaaacuggcaauuacuuuugcaccaaaccugauauuuuug
.....(((...))).((((((((((.((((((((((((((((((((.(.(((((.((.((....)).)).))))).).))))))))))))))))).))).)))))))))).

Structure
auuuaugcacugcag          a   -                 G U     c  c  a 
               ggagguauua guu ggugcAAAAGUAAUUGU G UUUUG ca ua a
               |||||||||| ||| ||||||||||||||||| | ||||| || ||  
               uuuuuauagu caa ccacguuuucauuaacg u aaaac gu au a
--------------g          c   a                 g c     a  a  g 


Annotation confidence Not enough data
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Genome context
chr6: 19314533-19314643 [+]

Database links

Mature ppy-miR-548a

Accession MIMAT0024373
Description Pongo pygmaeus ppy-miR-548a mature miRNA
Sequence 35 - AAAAGUAAUUGUGGUUUUUG - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116