miRBase entry: ppy-mir-3934

Stem-loop ppy-mir-3934


Accession
MI0020923
Description
Pongo pygmaeus ppy-mir-3934 precursor miRNA
Gene family
MIPF0001584; mir-3934


Sequence

gcccuuccuguccccaauuuUCAGGUGUGGAAUCUGAGGCAggaagcagugaaguaacuugcucagguugcacagcugggaaguggagcagggauuuggauccuugugu
.((.(((((((..(((.(((((((.((((.((((((((.((((..((......))..)))))))))))).)))).))))))).))).)))))))...))..........

Structure
---------g  --c       cc   a       G    G        G    aa  ag 
          cc   uuccugu  cca uuuUCAG UGUG AAUCUGAG CAgg  gc  u
          ||   |||||||  ||| ||||||| |||| |||||||| ||||  ||   
          gg   agggacg  ggu aaggguc acac uuggacuc guuc  ug  g
uguguuccua  uuu       -a   g       g    g        -    aa  aa 


Annotation confidence Not enough data
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Genome context
chr6: 33711181-33711289 [+]

Database links

Mature ppy-miR-3934

Accession MIMAT0024375
Description Pongo pygmaeus ppy-miR-3934 mature miRNA
Sequence 21 - UCAGGUGUGGAAUCUGAGGCA - 41
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116