Stem-loop ppy-mir-3661

Accession

MI0020936

Description

Pongo pygmaeus ppy-mir-3661 precursor miRNA

Gene family

MIPF0001530; mir-3661

Sequence

caccuucucgcagaggcucuUGACCUGGGACUCGGAUAGCUGCuugcacucguucagcugcucgauccacuggucaagcuccuuggugaacaccuucucguccaugaugcca
.......((((.((((..(((((((.((((.((((.((((((...((....)).)))))).))))))).).)))))))..)))).)))).........((((...))))...

Structure

----------------caccuuc    a    cu       U -   C    A      Cuu  a 
                       ucgc gagg  cuUGACC G GGA UCGG UAGCUG   gc c
                       |||| ||||  ||||||| | ||| |||| ||||||   ||  
                       agug uucc  gaacugg c ccu agcu gucgac   ug u
accguaguaccugcucuuccaca    g    uc       u a   -    c      --u  c 

Annotation confidence Not enough data

Genome context

chr5: 135676110-135676221 [+]

Mature ppy-miR-3661

• Accession: MIMAT0024388
• Description: Pongo pygmaeus ppy-miR-3661 mature miRNA
• Sequence: 21 - UGACCUGGGACUCGGAUAGCUGC - 43
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116