Stem-loop ppy-mir-3938

Accession

MI0020939

Description

Pongo pygmaeus ppy-mir-3938 precursor miRNA

Gene family

MIPF0001520; mir-3938

Sequence

caagguuuuuuuaaaggaauuuuuaaccugaucaccagauuaucuacaagggaauuuuuuuaauuuuuaaAAUUCCCUUGUAGAUAACCUGGugaucagguuggauggcucc
...............(((...(((((((((((((((((.(((((((((((((((((((..........))))))))))))))))))).)))))))))))))))))....)))

Structure

caagguuuuuuuaaa   -auu                 a                   uuua 
               gga    uuuaaccugaucaccag uuaucuacaagggaauuuu    a
               |||    ||||||||||||||||| |||||||||||||||||||     
               ccu    agguuggacuaguGGUC AAUAGAUGUUCCCUUAAaa    u
---------------   cggu                 C                   uuuu 

Annotation confidence Not enough data

Genome context

chr3: 90425193-90425304 [+]

Mature ppy-miR-3938

• Accession: MIMAT0024391
• Description: Pongo pygmaeus ppy-miR-3938 mature miRNA
• Sequence: 71 - AAUUCCCUUGUAGAUAACCUGG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116