miRBase entry: ppy-mir-2278

Stem-loop ppy-mir-2278


Accession
MI0020954
Description
Pongo pygmaeus ppy-mir-2278 precursor miRNA
Gene family
MIPF0001522; mir-2278


Sequence

ugauucugcugcagguguugGAGGGCAGUGUGUGUUGUGUGGggacuguguggacagguaucacccagacagcuugcacugacuccagacccugcugucaugucacggguaa
((((...((.(((((.(((((((..((((((..(((((.((((((((((....))))...)).)))).)))))..)))))).))))).))))))).))...)))).......

Structure
-------    ucu  u     u  -     GG      GU     G    -  ---    g 
       ugau   gc gcagg gu ugGAG  CAGUGU  GUUGU UGGg ga   cugu u
       ||||   || ||||| || |||||  ||||||  ||||| |||| ||   ||||  
       acug   ug cgucc ca accuc  gucacg  cgaca accc cu   gaca g
aaugggc    uac  u     -  g     -a      uu     g    a  aug    g 


Annotation confidence Not enough data
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Genome context
chr9: 90767932-90768043 [+]

Database links

Mature ppy-miR-2278

Accession MIMAT0024406
Description Pongo pygmaeus ppy-miR-2278 mature miRNA
Sequence 21 - GAGGGCAGUGUGUGUUGUGUGG - 42
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22453055
    Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
    "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
    "BMC Genomics (2012) 13:116