Stem-loop ppy-mir-4788

Accession

MI0020956

Description

Pongo pygmaeus ppy-mir-4788 precursor miRNA

Gene family

MIPF0001573; mir-4788

Sequence

ugauugggaaaugaaggauuACGGACCAGCUAAGGGAGGCAUuaggauccuuuuucuugccucccuuaguuggucccuaauccuucguuuggaucccaccgucuggauucu
.((((((((((((((((((((.(((((((((((((((((((..((((......))))))))))))))))))))))).))))))))))))....)))))..)))........

Structure

-------u   --     ----            C                   Uu    uc 
        gau  uggga    aaugaaggauuA GGACCAGCUAAGGGAGGCA  agga  c
        |||  |||||    |||||||||||| |||||||||||||||||||  ||||   
        cug  acccu    uugcuuccuaau ccugguugauucccuccgu  ucuu  u
ucuuaggu   cc     aggu            c                   --    uu 

Annotation confidence Not enough data

Genome context

chr3: 136839806-136839916 [+]

Mature ppy-miR-4788

• Accession: MIMAT0024408
• Description: Pongo pygmaeus ppy-miR-4788 mature miRNA
• Sequence: 21 - ACGGACCAGCUAAGGGAGGCAU - 42
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22453055
   Annotation of primate miRNAs by high throughput sequencing of small RNA libraries
   "Dannemann M, Nickel B, Lizano E, Burbano HA, Kelso J"
   "BMC Genomics (2012) 13:116