Stem-loop mes-MIR172a

Accession

MI0020965

Description

Manihot esculenta mes-MIR172a precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

4 open access papers mention mes-MIR172a
(8 sentences)

Sequence

ccauugaucagucaguauuggcggaugcgucaccaucaagauucacaaaacuaugaaggcuucaucgggacggugaguguacggccggcggcgguggcucuucuuacuuaaaagguuuccuuuuucguaugAGAAUCUUGAUGAUGCUGCAUcggcaaauaucugacuacaauaugg
((((.....((((((((((.((.((((((.((.(((((((((((..............(((((((((...))))))).)).(.((((....)))).)....((.(((..((((((...))))))..))).))))))))))))).)).)))))).)).)))).)))))).....))))

Structure

    ugauc      -    g  g      u  c           acaaaacuaugaaggcuucaucgggacggugaguguacggccggcggcgguggcucu  u   uu      u 
ccau     agucag uauu gc gaugcg ca caucaagauuc                                                         uc uac  aaaagg  
||||     |||||| |||| || |||||| || |||||||||||                                                         || |||  |||||| u
ggua     ucaguc auaa cg cUACGU GU GUAGUUCUAAG                                                         Ag aug  uuuucc  
    uaaca      u    a  g      C  A           ---------------------------------------------------------  u   cu      u 

Annotation confidence Not enough data

Genome context

scaffold07991: 535333-535509 [+]

Mature mes-miR172a

• Accession: MIMAT0024416
• Description: Manihot esculenta mes-miR172a mature miRNA
• Sequence: 132 - AGAAUCUUGAUGAUGCUGCAU - 152
• Evidence: not_experimental

References

1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
   "Amiteye S, Corral JM, Sharbel TF"
   African J Biotech. (2011) 10:2562-2573