miRBase entry: mes-MIR408

Stem-loop mes-MIR408


Accession
MI0020968
Description
Manihot esculenta mes-MIR408 precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
4 open access papers mention mes-MIR408
(12 sentences)

Sequence

gaggguaaagaaagagacggacaaagacugggaacaggcagagcauggguggaacuauuaacacaaguaucuguuuuagcaccacccAUGCACUGCCUCUUCCCUGGCuugcgggucuucuuuuucugcucccu
.((((...(((((((((.((((.(((...(((((.((((((.((((((((((..(((..((((........)))).)))..)))))))))).)))))).)))))...)))....)))))))))))))...))))

Structure
g    uaa         c    ---a   acu     c      a          aa   uu    caa 
 aggg   agaaagaga ggac    aag   gggaa aggcag gcaugggugg  cua  aaca   g
 ||||   ||||||||| ||||    |||   ||||| |||||| ||||||||||  |||  ||||    
 uccc   ucuuuuucu ucug    uuC   CCCUU UCCGUC CGUAcccacc  gau  uugu   u
-    ucg         -    ggcg   GGU     C      A          ac   -u    cua 


Annotation confidence Not enough data
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Genome context
scaffold00080: 302009-302142 [-]

Database links

Mature mes-miR408

Accession MIMAT0024419
Description Manihot esculenta mes-miR408 mature miRNA
Sequence 88 - AUGCACUGCCUCUUCCCUGGC - 108
Evidence not_experimental

References

  1. Overview of the potential of microRNAs and their target gene detection for cassava (Manihot esculenta) improvement
    "Amiteye S, Corral JM, Sharbel TF"
    African J Biotech. (2011) 10:2562-2573