miRBase entry: mse-mir-279b

Stem-loop mse-mir-279b


Accession
MI0020976
Description
Manduca sexta mse-mir-279b precursor miRNA
Gene family
MIPF0000184; mir-279


Sequence

aagacagaccugccacugguugcaguugauggguauaggucuaguaacacaguuuuaauauucugUGACUAGAUCUACACUCAUUGAuugcuuccaguu
..............(((((..(((((((((((((.((((((((((..(((((..(....)..))))))))))))))).)))))))))))))..))))).

Structure
aagacagaccugcc     uu             a          aa     uu u 
              acugg  gcaguugaugggu uaggucuagu  cacag  u a
              |||||  ||||||||||||| ||||||||||  |||||  |  
              ugacc  cguuAGUUACUCA AUCUAGAUCA  GUguc  a a
-------------u     uu             C          --     uu u 


Annotation confidence Not enough data
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Genome context
JH668768.1: 163114-163212 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mse-mir-279b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mse-miR-279b

Accession MIMAT0024427
Description Manduca sexta mse-miR-279b mature miRNA
Sequence 66 - UGACUAGAUCUACACUCAUUGA - 87
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22406339
    Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
    "Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
    "Insect Biochem Mol Biol (2012) 42:381-395