Stem-loop mse-mir-100

Accession

MI0020987

Description

Manduca sexta mse-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

ugucgccaacucgcgucucccagaguuuguguucaccagcacccggccccuuuaacuggAACCCGUAGAUCCGAACUUGUGcgcguuaugucguugggcgc
...(((((((.(((((......(((((((.(((.((......((((.........)))).....)).))).)))))))..))))).......))).)))).

Structure

ugu    -   ------u     cuccca       u   c  cagcac    ccc 
   cgcc aac       cgcgu      gaguuug guu ac      ccgg   c
   |||| |||       |||||      ||||||| ||| ||      ||||   u
   gcgg uug       gcgcG      UUCAAGC UAG UG      gguc   u
--c    g   cuguauu     ----UG       C   A  -CCCAA    aau 

Annotation confidence Not enough data

Genome context

JH668494.1: 416074-416174 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-100

Mature mse-miR-100

• Accession: MIMAT0024438
• Description: Manduca sexta mse-miR-100 mature miRNA
• Sequence: 60 - AACCCGUAGAUCCGAACUUGUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22406339
   Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
   "Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
   "Insect Biochem Mol Biol (2012) 42:381-395