miRBase entry: mse-mir-1000

Stem-loop mse-mir-1000


Accession
MI0020990
Description
Manduca sexta mse-mir-1000 precursor miRNA
Gene family
MIPF0000701; mir-1000


Sequence

gcccgccagccgccagcgcgccccgaccAUAUUGUCCUGUCACAGCAGUAcugccugguuacugcugcgccgggacaagcggucguggcgucgcaccaucau
...............(((((((.(((((...((((((((.(.((((((((((....)).)))))))).).))))))))..))))).)))).)))........

Structure
gcccgccagccgcca   -    c     AUA        U A        -  g 
               gcg cgcc cgacc   UUGUCCUG C CAGCAGUA cu c
               ||| |||| |||||   |||||||| | |||||||| ||  
               cgc gcgg gcugg   aacagggc g gucgucau gg c
-------uacuacca   u    u     -cg        c c        u  u 


Annotation confidence Not enough data
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Genome context
JH668702.1: 201373-201474 [-]

Database links

Mature mse-miR-1000

Accession MIMAT0024441
Description Manduca sexta mse-miR-1000 mature miRNA
Sequence 29 - AUAUUGUCCUGUCACAGCAGUA - 50
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22406339
    Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
    "Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
    "Insect Biochem Mol Biol (2012) 42:381-395