miRBase entry: mse-mir-2b

Stem-loop mse-mir-2b


Accession
MI0021030
Description
Manduca sexta mse-mir-2b precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

gggggcgugcgauagcuugucgcucacaaagugguugucgugugcaauacugagucauaUCACAGCCAGCUUUGAUGAGCgacaggcaccgacacuaaucaccg
((((..(((((...((((((((((((((((((((((((.((((((........).))))).))))))).))))).))))))))))))..)).)))...)).)).

Structure
-  -  -gc   -  aua            -     -       c     - aau 
 gg gg   gug cg   gcuugucgcuca caaag ugguugu gugug c   a
 || ||   ||| ||   |||||||||||| ||||| ||||||| ||||| |    
 cc cu   cac gc   cggacagCGAGU GUUUC ACCGACA Uauac g   c
g  a  aau   a  -ca            A     G       C     u agu 


Annotation confidence Not enough data
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Genome context
JH668296.1: 1650490-1650593 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mse-mir-2b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mse-miR-2b

Accession MIMAT0024480
Description Manduca sexta mse-miR-2b mature miRNA
Sequence 60 - UCACAGCCAGCUUUGAUGAGC - 80
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22406339
    Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
    "Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
    "Insect Biochem Mol Biol (2012) 42:381-395