miRBase entry: mse-mir-1a

Stem-loop mse-mir-1a


Accession
MI0021033
Description
Manduca sexta mse-mir-1a precursor miRNA
Gene family
MIPF0000038; mir-1

Literature search
0 open access papers mention mse-mir-1a
(0 sentences)

Sequence

aagaaaaggccuugcgcgaguuccgugcuuccuuacuucccauagugcuuauaaucauaUGGAAUGUAAAGAAGUAUGGAGcugcgcgggcguguccccgag
..((..(.((((.((((.(((((((((((((.((((...(((((.............)))))...)))).))))))))))))))))))))).).))......

Structure
----aa  aa g    u    g             c    uuc     gugcu 
      ga  a gccu gcgc aguuccgugcuuc uuac   ccaua     u
      ||  | |||| |||| ||||||||||||| ||||   |||||     a
      cu  u cggg cgcg ucGAGGUAUGAAG AAUG   GGUau     u
gagccc  -g g    -    -             A    UAA     acuaa 


Annotation confidence Not enough data
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Genome context
JH668637.1: 13777-13878 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from mse-mir-1a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mse-miR-1a

Accession MIMAT0024483
Description Manduca sexta mse-miR-1a mature miRNA
Sequence 60 - UGGAAUGUAAAGAAGUAUGGAG - 81
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22406339
    Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
    "Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
    "Insect Biochem Mol Biol (2012) 42:381-395