miRBase entry: mse-mir-2788

Stem-loop mse-mir-2788

Accession

MI0021042

Description

Manduca sexta mse-mir-2788 precursor miRNA

Gene family

MIPF0001204; mir-2788

Sequence

auccguacaaaguaugucgccguagagcUGGGGUUUCAAAGCGGCAUGUgccuccagucaugcaaugcccuuggaaaucccaaacgugcuggcgaccgcua
..........(((..(((((((((....(((((((((.(((.(((((.(((..........))))))))))).)))))))))....))).)))))).))).

Structure

auccguacaa   au      -   gagc         A   C     G   cucc 
          agu  gucgcc gua    UGGGGUUUC AAG GGCAU Ugc    a
          |||  |||||| |||    ||||||||| ||| ||||| |||     
          ucg  cagcgg cgu    acccuaaag uuc ccgua acg    g
---------a   -c      u   gcaa         g   -     -   uacu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH668475.1: 207485-207585 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mse-mir-2788

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature mse-miR-2788

Accession	MIMAT0024492
Description	Manduca sexta mse-miR-2788 mature miRNA
Sequence	29 - UGGGGUUUCAAAGCGGCAUGU - 49
Evidence	experimental Illumina [1]

References

PubMed ID: 22406339
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
"Zhang X, Zheng Y, Jagadeeswaran G, Ren R, Sunkar R, Jiang H"
"Insect Biochem Mol Biol (2012) 42:381-395