miRBase entry: cca-MIR156c

Stem-loop cca-MIR156c


Accession
MI0021066
Description
Cynara cardunculus cca-MIR156c precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
4 open access papers mention cca-MIR156c
(11 sentences)

Sequence

ggaugUUGACAGAAGAUAGAGAGCACugagaggacaugaagugcauauauauaaugcaccucgcuucuuugugcucuuuauacuucugucauuacccu
((.((.((((((((((((((((((((.((((((...(((.((((((.......)))))).))))))))).))))))))))).))))))))).)).)).

Structure
-  a  U         -           u      aca   a      au 
 gg ug UGACAGAAG AUAGAGAGCAC gagagg   uga gugcau  a
 || || ||||||||| ||||||||||| ||||||   ||| ||||||  u
 cc au acugucuuc uauuucucgug uucuuc   gcu cacgua  a
u  c  u         a           u      ---   c      au 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR156c

Accession MIMAT0024512
Description Cynara cardunculus cca-miR156c mature miRNA
Sequence 6 - UUGACAGAAGAUAGAGAGCAC - 26
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41