Stem-loop cca-MIR167

Accession

MI0021070

Description

Cynara cardunculus cca-MIR167 precursor miRNA

Gene family

MIPF0000023; MIR167_1

Sequence

gagauUGAAGCUGCCAGCAUGAUCUGGuguugucaaaaagucaccucuguguguguguguuuguguuuguguguguauauauuggaaggauuaagugaggucaauuaaucuuucugcguguuuuugagguguuuauuaguguguguguguguguguguguguuuuuaugaguaggguaagagagcuuaaccaggucaucuugcagcuucaaucacucg
..((((((((((((.((.((((((((((.............((((((.....(((((((................))))))).(((((((((((.((....)).)))))))))))..........))))))...........................((.(((((((.......))))))).))...)))))))))))).)))))))))))).....

Structure

---ga            C  C          --------------------------------------------guugucaaaaagu      uguguguguguguuuguguuuguguguguauauauu           g  a 
     gauUGAAGCUGC AG AUGAUCUGGu                                                         caccuc                                    ggaaggauuaa ug g
     |||||||||||| || ||||||||||                                                         ||||||                                    ||||||||||| ||  
     cuaacuucgacg uc uacuggacca                                                         guggag                                    ucuuucuaauu ac g
gcuca            u  -          auucgagagaaugggaugaguauuuuugugugugugugugugugugugugauuauuu      --------------------------uuuuugugcg           a  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR167

• Accession: MIMAT0024516
• Description: Cynara cardunculus cca-miR167 mature miRNA
• Sequence: 6 - UGAAGCUGCCAGCAUGAUCUGG - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41