Stem-loop cca-MIR168a

Accession

MI0021071

Description

Cynara cardunculus cca-MIR168a precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

1 open access papers mention cca-MIR168a
(1 sentences)

Sequence

ucugauUCGCUUGGUGCAGGUCGGGAAcagcuuugccgucgauuuucacauuugucuucacggugugagaaacucguacggugguuguugcucuugccuuacaucaacugaaucugaa
((.((((((.((((((.((((.((.(((((((..((((((((((((((((((((....)).))))))))))..))).)))))))))))).))...))))..)))))).)))))).)).

Structure

-  u      C      -C    --C  G       uu     -   --          -  u 
 uc gauUCG UUGGUG  AGGU   GG AAcagcu  gccgu cga  uuuucacauu ug c
 || |||||| ||||||  ||||   || |||||||  ||||| |||  |||||||||| ||  
 ag cuaagu aacuac  uccg   uc uuguugg  uggca gcu  aagagugugg ac u
a  u      c      au    uuc  g       --     u   ca          c  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR168a

• Accession: MIMAT0024517
• Description: Cynara cardunculus cca-miR168a mature miRNA
• Sequence: 7 - UCGCUUGGUGCAGGUCGGGAA - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41