Stem-loop cca-MIR169a

Accession

MI0021072

Description

Cynara cardunculus cca-MIR169a precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

2 open access papers mention cca-MIR169a
(3 sentences)

Sequence

guuuagUAGCCAAGGAUGACUUGCCUUguuugaacacaucaaguugcuggaaaguagcaccuuguuugguucguuaggcagucacuccuaggcuaacuugac
(((.(((((((.(((((((((.((((....(((((.((.((((.(((((.....))))).))))..)))))))..))))))))).)))).)))).))).)))

Structure

   u   -    A    -     U    Uguu     a  -u    u     g 
guu agU AGCC AGGA UGACU GCCU    ugaac ca  caag ugcug a
||| ||| |||| |||| ||||| ||||    ||||| ||  |||| ||||| a
cag uca ucgg uccu acuga cgga    gcuug gu  guuc acgau a
   u   a    a    c     -    --uu     -  uu    c     g 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR169a

• Accession: MIMAT0024518
• Description: Cynara cardunculus cca-miR169a mature miRNA
• Sequence: 7 - UAGCCAAGGAUGACUUGCCUU - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41