Stem-loop cca-MIR171

Accession

MI0021074

Description

Cynara cardunculus cca-MIR171 precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

3 open access papers mention cca-MIR171
(3 sentences)

Sequence

auccgagauauuguugcgguuuaaccuuaccauuuaaucggucacaacucucgacuauaugguuUGAUUGAGCCGCACCAAUAUCgcguguc
...((.(((((((.((((((((((.(..(((((.((.((((........).))).)).)))))..).)))))))))).))))))).))....

Structure

-auc  a       u          c uu     u  a   - uca 
    cg gauauug ugcgguuuaa c  accau ua ucg g   c
    || ||||||| |||||||||| |  ||||| || ||| |    
    gc CUAUAAC ACGCCGAGUU G  uggua au agc c   a
cugu  g       C          A Uu     u  c   u uca 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR171

• Accession: MIMAT0024520
• Description: Cynara cardunculus cca-miR171 mature miRNA
• Sequence: 65 - UGAUUGAGCCGCACCAAUAUC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41