Stem-loop cca-MIR172

Accession

MI0021075

Description

Cynara cardunculus cca-MIR172 precursor miRNA

Gene family

MIPF0000035; MIR172

Literature search

2 open access papers mention cca-MIR172
(3 sentences)

Sequence

ggcguggcaucaucaagauucacguacaaaaugcaaaagcuuuuugaggaugAGAAUCUUGAUGAUGCUGCAUcggcaa
((.((((((((((((((((((.(((.(((((.((....)).)))))...))).)))))))))))))))))).)).....

Structure

-----  c                  a   --a     u  a 
     gg guggcaucaucaagauuc cgu   caaaa gc a
     || |||||||||||||||||| |||   ||||| ||  
     cU CGUCGUAGUAGUUCUAAG gua   guuuu cg a
aacgg  A                  A   gga     u  a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR172

• Accession: MIMAT0024521
• Description: Cynara cardunculus cca-miR172 mature miRNA
• Sequence: 53 - AGAAUCUUGAUGAUGCUGCAU - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41