Stem-loop cca-MIR319

Accession

MI0021076

Description

Cynara cardunculus cca-MIR319 precursor miRNA

Gene family

MIPF0000010; MIR159

Sequence

auaauggaagaauuagagggagcuuccuucaguccacucauagguggguagaggguauggauuugcugccgacucauucauucaaacacaauaguaccauuguaguuugaacauacuauugugacugugugaaugaugcgggagacgaaucugauccuauccugauuguggUUGGACUGAAGGGAGCUCCCUuguugu
...............(((((((((((((((((((((.((((((.((((...(((((..(((((((((.(((..((((((((.((..((((((((((....(((.......)))))))))))))..)).))))))))..))).)).))))))).)))))..)))).)))))).))))))))))))))))))))).....

Structure

auaauggaagaauua                     c      g    uag     au       -  g   ac        u  aa          ccau   ag 
               gagggagcuuccuucagucca ucauag uggg   agggu  ggauuug cu ccg  ucauucau ca  cacaauagua    ugu  u
               ||||||||||||||||||||| |||||| ||||   |||||  ||||||| || |||  |||||||| ||  ||||||||||    |||  u
               uUCCCUCGAGGGAAGUCAGGU gguguu gucc   uccua  ucuaagc ga ggc  aguaagug gu  guguuaucau    aca  u
----------uguug                     U      a    -ua     -g       a  g   gu        u  ca          ----   ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR319

• Accession: MIMAT0024522
• Description: Cynara cardunculus cca-miR319 mature miRNA
• Sequence: 172 - UUGGACUGAAGGGAGCUCCCU - 192
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41