Stem-loop cca-MIR390

Accession

MI0021077

Description

Cynara cardunculus cca-MIR390 precursor miRNA

Gene family

MIPF0000101; MIR390

Literature search

2 open access papers mention cca-MIR390
(6 sentences)

Sequence

uccaggAAGCUCAGGAGGGAUAGCGUCauaaacagaucuuuuauucaacggaauguuuaugacguuauccauccugagcuucaugggu
((((.(((((((((((.(((((((((((((((((..(((.((....)).))).))))))))))))))))).))))))))))).)))).

Structure

-    g           G                 ga   u  a 
 ucca gAAGCUCAGGA GGAUAGCGUCauaaaca  ucu uu u
 |||| ||||||||||| |||||||||||||||||  ||| ||  
 gggu cuucgaguccu ccuauugcaguauuugu  agg aa u
u    a           a                 -a   c  c 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR390

• Accession: MIMAT0024523
• Description: Cynara cardunculus cca-miR390 mature miRNA
• Sequence: 7 - AAGCUCAGGAGGGAUAGCGUC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41