Stem-loop cca-MIR393

Accession

MI0021078

Description

Cynara cardunculus cca-MIR393 precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

1 open access papers mention cca-MIR393
(10 sentences)

Sequence

gaaacuUCCAAAGGAAUCGCAUUGAUCCauguuguuuaauuaauucgaucugaaacugacuaauugauucuuauauguaccuucgauggaaaauucgaucugaguuuauaaauuggaucaugcguucucuuuggaaguuucc
((((((((((((((((.(((((.((((((....(((((...(((((((((.(((.....(((.((((...............)))))))....))))))).)))))..))))))))))))))))))).))))))))))))).

Structure

-             -   U     U      uguu     auu     -    u   acuga   a    uucuua 
 gaaacuUCCAAAG GAA CGCAU GAUCCa    guuua   aauuc gauc gaa     cua uuga      u
 ||||||||||||| ||| ||||| ||||||    |||||   ||||| |||| |||     ||| ||||      a
 cuuugaagguuuc cuu gcgua cuaggu    uaaau   uugag cuag cuu     ggu agcu      u
c             u   -     -      ----     -au     u    -   -aaaa   -    uccaug 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR393

• Accession: MIMAT0024524
• Description: Cynara cardunculus cca-miR393 mature miRNA
• Sequence: 7 - UCCAAAGGAAUCGCAUUGAUCC - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41