Stem-loop cca-MIR394

Accession

MI0021079

Description

Cynara cardunculus cca-MIR394 precursor miRNA

Gene family

MIPF0000100; MIR394

Sequence

agaguuccUUGGCAUUCUGUCCACCUCCccuuuucuuuuuuaucaaaacccacaacuguaguaggaaaaaggugagagggaagaguuuuucuguggguguaauuagggcguggauguaguuuggaguagaaaagaaaaauaagauagagaaggugguuuuuuuucugaaaauugauguaggguggaggugggcauacugccaguggagcuc
.(((((((((((((...((((((((((((((((((((((((((..((((((((..((.((((.(.(...(.(.((((((......))))))).)...).).)))).)).)))).....))))...)))))))))))).......(((((((((.....)))))))))............))).)))))))))))...)))))).)))))))

Structure

a       -      UUC           -   ------------------------------------------            -ca    -----    aa  g    a g aaa g u      ga 
 gaguucc UUGGCA   UGUCCACCUCC ccu                                          uuucuuuuuuau   aaac     ccac  cu uagu g a   a g gagagg  a
 ||||||| ||||||   ||||||||||| |||                                          ||||||||||||   ||||     ||||  || |||| | |   | | ||||||   
 cucgagg gaccgu   acggguggagg ggg                                          aaagaaaagaug   uuug     ggug  gg auua u u   u u cuuuuu  g
-       u      cau           u   auguaguuaaaagucuuuuuuuugguggaagagauagaauaa            agg    augua    -c  g    a g ggg g -      ga 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR394

• Accession: MIMAT0024525
• Description: Cynara cardunculus cca-miR394 mature miRNA
• Sequence: 9 - UUGGCAUUCUGUCCACCUCC - 28
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41