miRBase entry: cca-MIR395a

Stem-loop cca-MIR395a


Accession
MI0021080
Description
Cynara cardunculus cca-MIR395a precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
1 open access papers mention cca-MIR395a
(1 sentences)

Sequence

cccucagagauccucccaacacuucacugggauguuuguucaagauuuccuaUUGAAGUGUUUGGGGGGACUCcaagugc
..((..(((.((((((((((((((((.(((((.((((.....)))).))))).))))))).))))))))))))..))...

Structure
-cc  ca   a         -       c     u    g 
   cu  gag uccucccaa cacuuca uggga guuu u
   ||  ||| ||||||||| ||||||| ||||| |||| u
   ga  CUC AGGGGGGUU GUGAAGU auccu uaga c
cgu  ac   -         U       U     u    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR395a

Accession MIMAT0024526
Description Cynara cardunculus cca-miR395a mature miRNA
Sequence 53 - UUGAAGUGUUUGGGGGGACUC - 73
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41