Stem-loop cca-MIR396b

Accession

MI0021084

Description

Cynara cardunculus cca-MIR396b precursor miRNA

Gene family

MIPF0000047; MIR396

Literature search

3 open access papers mention cca-MIR396b
(3 sentences)

Sequence

cuaucuUCCCACAGCUUUAUUGAACUGcaaagguuuaaguacaaaaaaaaggacagauccaacagaucaacauugaaccaugcaguucaagaaagcuguggaagaacaga
...((((((.((((((((.((((((((((..(((((((............(((....)))............))))))).)))))))))).)))))))))))))).....

Structure

--cua      C        A          aa       guacaaaaaaaa   c 
     ucuUCC ACAGCUUU UUGAACUGca  gguuuaa            gga a
     |||||| |||||||| ||||||||||  |||||||            |||  
     agaagg ugucgaaa aacuugacgu  ccaaguu            ccu g
agaca      -        g          -a       acaacuagacaa   a 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR396b

• Accession: MIMAT0024531
• Description: Cynara cardunculus cca-miR396b mature miRNA
• Sequence: 7 - UCCCACAGCUUUAUUGAACUG - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41