miRBase entry: cca-MIR398

Stem-loop cca-MIR398


Accession
MI0021085
Description
Cynara cardunculus cca-MIR398 precursor miRNA
Gene family
MIPF0000107; MIR398

Literature search
2 open access papers mention cca-MIR398
(12 sentences)

Sequence

acccaacagggugugauaugagaacacauauauaagaugcaacaacauguaguacuugguauuuuauuaUGUGUUCUCAGGUCGCCCCUGcaggguuuuc
((((..(((((.(((((.((((((((((((.(((((((((....((.....)).....))))))))))))))))))))).))))))))))..))))....

Structure
----    aa     u     a            u         -aaca  a 
    accc  caggg gugau ugagaacacaua auaagaugc     ac u
    ||||  ||||| ||||| |||||||||||| |||||||||     || g
    uggg  GUCCC CGCUG ACUCUUGUGUau uauuuuaug     ug u
cuuu    ac     -     G            -         guuca  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR398

Accession MIMAT0024532
Description Cynara cardunculus cca-miR398 mature miRNA
Sequence 70 - UGUGUUCUCAGGUCGCCCCUG - 90
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41