Stem-loop cca-MIR408

Accession

MI0021087

Description

Cynara cardunculus cca-MIR408 precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

1 open access papers mention cca-MIR408
(2 sentences)

Sequence

ugugaggcuagacggggacgagacagagcccgaaaaagccuagucaauacuuggguauguauuguuaucuuuuucaUGCACUGCCUCUUCCCUGGCUaucaucuuuc
.(((((((....((((((.(((.(((.((..(((((((..(((.((((((........))))))))).)))))))..)).))).))).))))))))).)))).....

Structure

----u    -   uaga      c   a   a  cc       cc   u      uug 
     guga ggc    cgggga gag cag gc  gaaaaag  uag caauac   g
     |||| |||    |||||| ||| ||| ||  |||||||  ||| ||||||    
     uacu UCG    GUCCCU CUC GUC CG  cuuuuuc  auu guuaug   g
cuuuc    a   ----      U   C   A  Ua       -u   -      uau 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR408

• Accession: MIMAT0024534
• Description: Cynara cardunculus cca-miR408 mature miRNA
• Sequence: 77 - UGCACUGCCUCUUCCCUGGCU - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41