miRBase entry: cca-MIR6105a

Stem-loop cca-MIR6105a


Accession
MI0021090
Description
Cynara cardunculus cca-MIR6105a precursor miRNA
Gene family
MIPF0001457; MIR6105


Sequence

ugagaucaugugagaccaaccuauuuuugugagacccgugagaccaacuguuuacauuuaaaacuucacuguaaaacacugugaaaaguaacuuuuucacaacaauauuuuugccaugaagguucagauauuuuauuuucacaguguuuuauaacgaaguuucaaguauaaauauaggguuucacaagucuuACGAAAACAUGUUGGUCUCACGUGa
.....(((((((((((((((...((((((((((((..((((((((...((((((.((((.(((((((..((((((((((((((((((.(((............(((((((..(((.....)))..))))))))))))))))))))))))))))..))))))).)))).))))))...))))))))..))))))))))))...)))))))))))))))

Structure
ugaga               cua            cc        aac      c    a       ac                  g   cuuuuucacaac       uu   a 
     ucaugugagaccaac   uuuuugugagac  gugagacc   uguuua auuu aaacuuc  uguaaaacacugugaaaa uaa            aauauuu  gcc u
     |||||||||||||||   ||||||||||||  ||||||||   |||||| |||| |||||||  |||||||||||||||||| |||            |||||||  ||| g
     aGUGCACUCUGGUUG   AAAAGCAuucug  cacuuugg   auaaau ugaa uuugaag  auauuuugugacacuuuu auu            uuauaga  ugg a
-----               UAC            aa        gau      a    c       ca                  -   ------------       cu   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR6105a

Accession MIMAT0024538
Description Cynara cardunculus cca-miR6105a mature miRNA
Sequence 193 - ACGAAAACAUGUUGGUCUCACGUG - 216
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41