Stem-loop cca-MIR6105b

Accession

MI0021093

Description

Cynara cardunculus cca-MIR6105b precursor miRNA

Gene family

MIPF0001457; MIR6105

Sequence

uuagaucagucuguguucgugagaccugugaaggcacaaaauacacuaaagccuucaaagcaaaaacacugugaagguacaaaaacaaacuucuacaauguuuuugccaugaagguuugguguuuuuguaccuucacaauguuauauugugaagguuuuguguuguuuugugcuuuuacgggacuCACGAAAACAGACUGGUCUCACA
..((((((((((((.((((((((.((((((((((((((((((((((.((((((((((.......((((.((((((((((((((((((..((((..(((.....)))....))))......)))))))))))))))))).))))......))))))))))))).))))))))))))))))))).)))))))).))))))))))))....

Structure

--uu            g        a                   -   u          aagcaaa    c                  ----aa    --ua   u 
    agaucagucugu uucgugag ccugugaaggcacaaaaua cac aaagccuuca       aaca ugugaagguacaaaaaca      cuuc    caa g
    |||||||||||| |||||||| ||||||||||||||||||| ||| ||||||||||       |||| ||||||||||||||||||      ||||    ||| u
    UCUGGUCAGACA AAGCACuc gggcauuuucguguuuugu gug uuuuggaagu       uugu acacuuccauguuuuugu      gaag    guu u
ACAC            A        a                   u   -          -guuaua    a                  gguuug    uacc   u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6105b

• Accession: MIMAT0024542
• Description: Cynara cardunculus cca-miR6105b mature miRNA
• Sequence: 186 - CACGAAAACAGACUGGUCUCACA - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41