Stem-loop cca-MIR6108a

Accession

MI0021094

Description

Cynara cardunculus cca-MIR6108a precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108a
(2 sentences)

Sequence

uuaaugUGAGAAGCGUAAGAAGGGAUCuagacccuugaucacguuuuaucuaaaacccacccaugaaucgcgguugauacguggauuaaucugaugcaucuuggugcaucucauccaaaggugcauucaaaggugaagaucauuucuuacgcuucuc
.......(((((((((((((((.(((((..(((.((((....(((((....)))))....(((((.(((......))).))))).........(((((((((((((.....)).)).))))))))))))).)))..))))).)))))))))))))))

Structure

uuaaugU               G     ag   c    ucacguuuuaucuaaaacccacccaugaaucgcgguugauacguggauuaaucug         -  -  c 
       GAGAAGCGUAAGAAG GAUCu  acc uuga                                                       augcaucuu gg ug a
       ||||||||||||||| |||||  ||| ||||                                                       ||||||||| || || u
       cucuucgcauucuuu cuaga  ugg aacu                                                       uacguggaa cc ac c
-------               a     ag   a    -------------------------------------------------------         a  u  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108a

• Accession: MIMAT0024543
• Description: Cynara cardunculus cca-miR6108a mature miRNA
• Sequence: 7 - UGAGAAGCGUAAGAAGGGAUC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41