Stem-loop cca-MIR6108b

Accession

MI0021096

Description

Cynara cardunculus cca-MIR6108b precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108b
(2 sentences)

Sequence

uuacauUGAGAAGCGUAAGAAGGGAUCuagacccuugaucacuuuuaauucagccccacccacgaauuguaguuaucacagaaauugaucuggcgcaucucggugcaccguauucguguugaucuucaauaggauugacccaagggugagaucccuucuuacccuucuuau
......(((((((.((((((((((((((..(((((((...(((..((((((............)))))).))).....((((......))))((((......))))..((....)).(((((((((....))))))))).))))))).)))))))))))))).))))))).

Structure

uuacau       C              ag       ----------------------------------------------------------------auc   uu      agccc 
      UGAGAAG GUAAGAAGGGAUCu  acccuug                                                                   acu  uaauuc     c
      ||||||| ||||||||||||||  |||||||                                                                   |||  ||||||      
      auucuuc cauucuucccuaga  ugggaac                                                                   uga  guuaag     a
-----u       c              -g       ccaguuaggauaacuucuaguugugcuuaugccacguggcucuacgcggucuaguuaaagacacuau   -u      caccc 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108b

• Accession: MIMAT0024545
• Description: Cynara cardunculus cca-miR6108b mature miRNA
• Sequence: 7 - UGAGAAGCGUAAGAAGGGAUC - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41