Stem-loop cca-MIR6110

Accession

MI0021098

Description

Cynara cardunculus cca-MIR6110 precursor miRNA

Literature search

1 open access papers mention cca-MIR6110
(1 sentences)

Sequence

caugcugAUCUUGUAACAUUUGAUGAUGUGGgugucaauuuuaucauucauuuuugcaguaacccuuuaguaaaccucucaugaaugaguAUCCACGUCAUCAAAUGUUACAAGaucaacag
..((.(((((((((((((((((((((((((((((.(.......((((((((.(((((............)))))......)))))))))))))))))))))))))))))))))))))).)).

Structure

ca  c                             u aauuuua        -----u     aguaa 
  ug ugAUCUUGUAACAUUUGAUGAUGUGGgug c       ucauucau      uuugc     c
  || ||||||||||||||||||||||||||||| |       ||||||||      |||||      
  ac acuaGAACAUUGUAAACUACUGCACCUAu g       aguaagua      aaaug     c
-g  a                             - -------        cucucc     auuuc 

Annotation confidence Low

Genome context

Unknown

Mature cca-miR6110-5p

• Accession: MIMAT0024547
• Description: Cynara cardunculus cca-miR6110-5p mature miRNA
• Sequence: 8 - AUCUUGUAACAUUUGAUGAUGUGG - 31
• Evidence: experimental ; Illumina [1]

Mature cca-miR6110-3p

• Accession: MIMAT0024548
• Description: Cynara cardunculus cca-miR6110-3p mature miRNA
• Sequence: 91 - AUCCACGUCAUCAAAUGUUACAAG - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41