Stem-loop cca-MIR6108c

Accession

MI0021103

Description

Cynara cardunculus cca-MIR6108c precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108c
(2 sentences)

Sequence

agugauAAGCGUAAGAAGAGAUCUGAACCguugaucgccuuuuaucucaaacccguucauuaacgcuugauacgaggauugauccaaugcaucucaucgcggugcaucuaaccuaaugugcauccaagguggagaucucuucuuaugcuucucaccu
.((((.((((((((((((((((((..(((...((((((........((((.((((((((........))).))).)).))))....(((((((.......)))))))..........))).)))...)))..)))))))))))))))))).))))..

Structure

-a    u                  GA   guu   -   ---------------------------cuuuuauc    a  -   -   uua 
  guga AAGCGUAAGAAGAGAUCU  ACC   gau cgc                                   ucaa cc cgu uca   a
  |||| ||||||||||||||||||  |||   ||| |||                                   |||| || ||| |||    
  cacu uucguauucuucucuaga  ugg   cua gug                                   aguu gg gca agu   c
uc    c                  gg   aac   c   uaauccaaucuacguggcgcuacucuacguaaccu    a  a   u   ucg 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108c

• Accession: MIMAT0024555
• Description: Cynara cardunculus cca-miR6108c mature miRNA
• Sequence: 7 - AAGCGUAAGAAGAGAUCUGAACC - 29
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41