Stem-loop cca-MIR6108d

Accession

MI0021104

Description

Cynara cardunculus cca-MIR6108d precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108d
(2 sentences)

Sequence

cgugugAUAAGGAGAGUUAAGCUGAGAAGCguaagaaggaaucaauacucuucgaugcaccuuaggaugagauguaucagaucaauccccguaucaagcgcgcuucaugugugaguuugagauuaaaugugaucaauaguacaaaucucuucuuacgcuucucaccuugucucucuuucucaca
..(((((.((((((((.((((.((((((((((((((((((.....((((....((((((.((((...)))).)))))).(((((.........((((((.(((.......))).)))))).........)))))...))))....)).)))))))))))))))).)))).)))))))).)))))

Structure

cg     U        U    C                -  aucaa    cuucgaugcaccuuaggaugagauguauca     auccccgua      g   uu 
  ugugA AAGGAGAG UAAG UGAGAAGCguaagaag ga     uacu                              gauca         ucaagc cgc  c
  ||||| |||||||| |||| |||||||||||||||| ||     ||||                              |||||         |||||| |||  a
  acacu uuucucuc guuc acucuucgcauucuuc cu     auga                              cuagu         aguuug gug  u
--     c        u    c                u  -aaac    ---------------------------uaa     guaaauuag      a   ug 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108d

• Accession: MIMAT0024556
• Description: Cynara cardunculus cca-miR6108d mature miRNA
• Sequence: 7 - AUAAGGAGAGUUAAGCUGAGAAGC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41