Stem-loop cca-MIR6108e

Accession

MI0021105

Description

Cynara cardunculus cca-MIR6108e precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108e
(2 sentences)

Sequence

agaaccGUAAGAAGAGAUCUCCACCCUUGGaucaaucuuaauugaaugucaacacuaaugaggugcaacgagaugcaccagaccaaaucccuucuaaaacggaauucauggugggcaugagaucaaaagugAUCAAGGGUUCAGAUCUCUUCUUaugcuucu
((((.(((((((((((((((..(((((((.((((......(((..(((((..(((((.(((((((((......))))))........(((..........)))..)))))))))))))..)))......)))))))))))..))))))))))))))).))))

Structure

    c               CC       G    aucuua   ga     aa     a   --------------------------      ac 
agaa cGUAAGAAGAGAUCU  ACCCUUG auca      auu  auguc  cacua uga                          ggugca  g
|||| |||||||||||||||  ||||||| ||||      |||  |||||  ||||| |||                          ||||||   
ucuu guaUUCUUCUCUAGA  UGGGAAC UAgu      uag  uacgg  guggu acu                          ccacgu  a
    c               CU       -    gaaaac   ag     --     -   uaaggcaaaaucuucccuaaaccaga      ag 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108e-5p

• Accession: MIMAT0024557
• Description: Cynara cardunculus cca-miR6108e-5p mature miRNA
• Sequence: 7 - GUAAGAAGAGAUCUCCACCCUUGG - 30
• Evidence: experimental ; Illumina [1]

Mature cca-miR6108e-3p

• Accession: MIMAT0024558
• Description: Cynara cardunculus cca-miR6108e-3p mature miRNA
• Sequence: 132 - AUCAAGGGUUCAGAUCUCUUCUU - 154
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41