Stem-loop cca-MIR6108f

Accession

MI0021106

Description

Cynara cardunculus cca-MIR6108f precursor miRNA

Gene family

MIPF0001380; MIR6108

Literature search

1 open access papers mention cca-MIR6108f
(2 sentences)

Sequence

ggaaguUAUGGUGAGAAGGGUAAGAAGggaucuccacccuuggauaaauccuaauuggauaucaacacuaaugagaugcacuagaucaauucccaugagaagcgcaauucaugggauggggugagauuaaaagugaucacccuucuuacgcuucucaccuuaauuccua
((((.(((.(((((((((.(((((((((((((((.(((((..((((..(((.....)))))))...........(((.......)))...(((((((((........))))))))).))))))))))............)))))))))).))))))))).)))))))..

Structure

--    g   U         G          ------------     c     uggauaaauccuaauuggauaucaacacuaaugagaugcacuagaucaau         aag 
  ggaa uUA GGUGAGAAG GUAAGAAGgg            aucuc acccu                                                  ucccaugag   c
  |||| ||| ||||||||| ||||||||||            ||||| |||||                                                  |||||||||    
  ccuu aau ccacucuuc cauucuuccc            uagag ugggg                                                  aggguacuu   g
au    -   u         g          acuagugaaaau     -     -------------------------------------------------u         aac 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6108f

• Accession: MIMAT0024559
• Description: Cynara cardunculus cca-miR6108f mature miRNA
• Sequence: 7 - UAUGGUGAGAAGGGUAAGAAG - 27
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41