Stem-loop cca-MIR6115

Accession

MI0021107

Description

Cynara cardunculus cca-MIR6115 precursor miRNA

Sequence

cguucaUCUGGACGGUAUGCACAUGUGCAUacaaguaauuuguaaggaauuugaccuguauguacaugcacacgugcauagaaaccaagaaacaccuucaguuacuuguaugcacaugugcauaucauacagaugaacgg
((((((((((...(((((((((((((((((((((((((((.(.((((..((((...(.(((((((........))))))).)...)))).....))))))))))))))))))))))))))))))))...)))))))))).

Structure

-          GAC                           u u    ---aa    acc g       aug 
 cguucaUCUG   GGUAUGCACAUGUGCAUacaaguaauu g aagg     uuug   u uauguac   c
 ||||||||||   ||||||||||||||||||||||||||| | ||||     ||||   | |||||||    
 gcaaguagac   cuauacguguacacguauguucauuga c uucc     gaac   a auacgug   a
g          aua                           - -    acaaa    caa g       cac 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6115

• Accession: MIMAT0024560
• Description: Cynara cardunculus cca-miR6115 mature miRNA
• Sequence: 7 - UCUGGACGGUAUGCACAUGUGCAU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41