miRBase entry: cca-MIR6116

Stem-loop cca-MIR6116


Accession
MI0021109
Description
Cynara cardunculus cca-MIR6116 precursor miRNA


Sequence

gaauagcuCAUGCUUGUGAUCAAAUGAUGgugaagcacuuaagcuucauuguaaauaccauaaccaauucccuaugaaaagguaauuguggccuagaaucacucauccugucauccauccucaugcaucaaacugguuaagugcuucaccaUCAUUUGAUCACAAGCAUGAGcuauuca
((((((((((((((((((((((((((((((((((((((((((.(.....((((...........(((((.(((......))).)))))((((...((........))..))))..........)))).......).)))))))))))))))))))))))))))))))))))))))))).

Structure
-                                          g --uucau    ------------------------aauaccauaac     c   au 
 gaauagcuCAUGCUUGUGAUCAAAUGAUGgugaagcacuuaa c       ugua                                   caauu ccu  g
 |||||||||||||||||||||||||||||||||||||||||| |       ||||                                   ||||| |||   
 cuuaucGAGUACGAACACUAGUUUACUaccacuucgugaauu g       acgu                                   guuaa gga  a
a                                          g ucaaacu    acuccuaccuacuguccuacucacuaagauccggu     u   aa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cca-miR6116-5p

Accession MIMAT0024562
Description Cynara cardunculus cca-miR6116-5p mature miRNA
Sequence 9 - CAUGCUUGUGAUCAAAUGAUG - 29
Evidence experimental
Illumina [1]

Mature cca-miR6116-3p

Accession MIMAT0024563
Description Cynara cardunculus cca-miR6116-3p mature miRNA
Sequence 152 - UCAUUUGAUCACAAGCAUGAG - 172
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22272770
    The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
    De Paola D, Cattonaro F, Pignone D, Sonnante G
    BMC Genomics (2012) 13:41