Stem-loop cca-MIR6117

Accession

MI0021110

Description

Cynara cardunculus cca-MIR6117 precursor miRNA

Sequence

cucaugGGUUAGGUUGAUCGGGUUGAAGACauuugaacaacacaauccaauguuugugguuugaaaaaucuuaacccaacccaaccuagcccguacgg
...(((((((((((((...(((((((.((..(((((((..(((((........))))))))))))...)))))))))....)))))))))))))....

Structure

-cuc             -AUC       A  -Ca       aa     ucc 
    augGGUUAGGUUG    GGGUUGA GA   uuugaac  cacaa   a
    |||||||||||||    ||||||| ||   |||||||  |||||    
    ugcccgauccaac    cccaauu cu   aaguuug  guguu   a
ggca             ccaa       -  aaa       --     ugu 

Annotation confidence Not enough data

Genome context

Unknown

Mature cca-miR6117

• Accession: MIMAT0024564
• Description: Cynara cardunculus cca-miR6117 mature miRNA
• Sequence: 7 - GGUUAGGUUGAUCGGGUUGAAGAC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22272770
   The miRNAome of globe artichoke: conserved and novel micro RNAs and target analysis
   De Paola D, Cattonaro F, Pignone D, Sonnante G
   BMC Genomics (2012) 13:41