Stem-loop sequence bta-mir-1246

Accession

MI0021112 (change log)

Description

Bos taurus miR-1246 stem-loop

Literature search

8 open access papers mention bta-mir-1246
(18 sentences)

Stem-loop

   caa    u    u gauu    gagc        gga 
5'    caua uaaa g    uuug    aggaaguu   a
      |||| |||| |    ||||    ||||||||    
3'    gugu auuu c    aaac    ucuuucgg   u
   gac    c    - --au    agac        aga 

Deep sequencing

3921 reads, 401 reads per million, 73 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr1: 117271718-117271790 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075EEF4_9913
• miRBase Tracker:MI0021112

Mature sequence bta-miR-1246

• Accession: MIMAT0024567
• Sequence: 11 - aauggauuuuuggagcagg - 29
• Deep sequencing: 3858 reads, 73 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-1246

References

1. PMID:22298343 "Deep sequencing reveals predominant expression of miR-21 amongst the small non-coding RNAs in retinal microvascular endothelial cells" Guduric-Fuchs J, O'Connor A, Cullen A, Harwood L, Medina RJ, O'Neill CL, Stitt AW, Curtis TM, Simpson DA J Cell Biochem. 113:2098-2111(2012).